User Guide
Module Documentation
Extended Notes
GImaps
PooledScreens
PooledScreens.calculateDrugScreen()
PooledScreens.calculateFlowBasedScreen()
PooledScreens.copy()
PooledScreens.getPhenotypeScores()
Counter
Counter.build_counts_anndata()
Counter.get_counts_matrix()
Counter.load_counts_matrix()
Counter.load_library()
fastq_to_count_dual_guide()
fastq_to_count_single_guide()
map_to_library_dual_guide()
map_to_library_single_guide()
fastq_to_count_merged_reads()
get_spacers_cas12()
map_to_cas12_pairs_library()
map_to_cas12_triplets_library()
calculateDelta()
calculatePhenotypeScore()
calculateZScorePhenotypeScore()
generatePseudoGeneLabels()
matrixTest()
runPhenoScore()
runPhenoScoreForReplicate()
seqDepthNormalization()
draw_threshold()
label_as_black()
label_resistance_hit()
label_sensitivity_hit()
plotReplicateScatter()
plot_volcano()
prep_data()
loadScreenProcessingData()
load_cas9_sgRNA_library()
read_screen_pkl()
write_screen_pkl()
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